Package: rplanes 0.1.0

VP Nagraj

rplanes: Plausibility Analysis of Epidemiological Signals

Provides functionality to prepare data and analyze plausibility of both forecasted and reported epidemiological signals. The functions implement a set of plausibility algorithms that are agnostic to geographic and time resolutions and are calculated independently then presented as a combined score.

Authors:VP Nagraj [aut, cre], Desiree Williams [aut], Amy Benefield [aut]

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rplanes.pdf |rplanes.html✨
rplanes/json (API)
NEWS

# Install 'rplanes' in R:

install.packages('rplanes', repos = c('https://signaturescience.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/signaturescience/rplanes/issues

On CRAN:

6.28 score 8 stars 7 scripts 148 downloads 17 exports 37 dependencies

Last updated 4 months agofrom:6e9fe6d516. Checks:OK: 7. Indexed: yes.

Target	Result	Date
Doc / Vignettes	OK	Oct 16 2024
R-4.5-win	OK	Oct 16 2024
R-4.5-linux	OK	Oct 16 2024
R-4.4-win	OK	Oct 16 2024
R-4.4-mac	OK	Oct 16 2024
R-4.3-win	OK	Oct 16 2024
R-4.3-mac	OK	Oct 16 2024

Exports:%>%%m-%is_forecast is_observed plane_cover plane_diff plane_repeat plane_score plane_seed plane_shape plane_taper plane_trend plane_zero read_forecast rplanes_explorer to_signal valid_dates

Dependencies:bit bit64 cli clipr cpp11 crayon dplyr dtw ecp fansi generics glue hms lifecycle lubridate magrittr pillar pkgconfig prettyunits progress proxy purrr R6 Rcpp readr rlang stringi stringr tibble tidyr tidyselect timechange tzdb utf8 vctrs vroom withr

Basic Usage

Rendered frombasic-usage.Rmdusingknitr::rmarkdownon Oct 16 2024.

Last update: 2024-07-17
Started: 2023-10-25

PLANES Components

Rendered fromplanes-components.Rmdusingknitr::rmarkdownon Oct 16 2024.

Last update: 2024-07-17
Started: 2023-12-20

PLANES Interpretation

Rendered frominterpretation.Rmdusingknitr::rmarkdownon Oct 16 2024.

Last update: 2024-07-17
Started: 2024-07-17

rplanes Explorer

Rendered fromrplanes-explorer.Rmdusingknitr::rmarkdownon Oct 16 2024.

Last update: 2023-12-20
Started: 2023-12-20

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Check completeness of seed and signal data	check_incomplete
Sliding windows	create_sliding_windows_df
Cut into categorical differences	cutter
Epiweek start	epiweek_start
Determine shapes	get_shapes
Check forecast	is_forecast
Check observed	is_observed
Month start	month_start
Coverage component	plane_cover
Difference component	plane_diff
Repeat component	plane_repeat
Score PLANES components	plane_score
Create seed	plane_seed
Shape component	plane_shape
Taper component	plane_taper
Trend component	plane_trend
Zero component	plane_zero
Quantile boundary	q_boundary
Read in forecast file	read_forecast
Resolve resolution	resolve_resolution
'rplanes' explorer app launcher	rplanes_explorer
Seed engine	seed_engine
Chunk a vector	to_chunk
Create signal object	to_signal
Validate dates	valid_dates
Validate location	valid_location